PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018733-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 318aa    MW: 34452.5 Da    PI: 9.8597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018733-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.91.7e-13154180127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykte+Cr +  +G C+yG++C+FaHg+
  WALNUT_00018733-RA 154 YKTEICRSWEDSGSCRYGSKCQFAHGK 180
                         9************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-18151185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.812153181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10153184IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-9153180IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10154180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEGLLHSNSG NSNIPRLNGG LNGGVLMPMQ MDNQSLFGKG RHSYIHHHQQ SKSPTLAGSY  60
NENLDLGDSP LFRYLRTGSP DSYKRPPLSS VENLEMAWSP SIFSTPVKVE EEVLVMDGIL  120
VSSLPAGGRY ARSATDSGGS TTSSSSSSGG KSLYKTEICR SWEDSGSCRY GSKCQFAHGK  180
EELRPTRFPA KNKSEVQMYK SCSGTGSGTY GAKNRHVHQV VAAAGTVAAA AATTQTRSPA  240
KPETASPRKP EDMKKKPKTT ISRNNWSPQD DGIETLLPHS SSKKPPSRTD VDAHIDYTLY  300
GATPRKRLAV FADIRSER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218882.14e-60PREDICTED: tristetraprolin-like
RefseqXP_008218883.14e-60PREDICTED: tristetraprolin-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-10C3H family protein