PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017860-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 231aa    MW: 25384.5 Da    PI: 9.9495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017860-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-055981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  WALNUT_00017860-RA 59 YTCSFCKREFKSAQALGGHMNVH 81
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-65685No hitNo description
PfamPF139121.9E-65982IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1775986IPR007087Zinc finger, C2H2
SMARTSM003550.00325981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MERNSLSNSL KDGSFGTRAI KDPINMNMNN NVPKDSVNCG SQSYGDHYVN GFSWPPRSYT  60
CSFCKREFKS AQALGGHMNV HRRDRARLRQ SPPRDGQHPF LNLNPNPNPK FSSSSSSRRQ  120
LTPFSVPLPS LVSPPRSSLT LPYSASLSEG KKWGTLFAGS LFDSSSPKGM ALTNTKSEKS  180
YSGGEEFDGS KKGGGCKIFK KPDQIVRLDL EIGLLSDSKE DIDLELRLGC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-135481229superman protein
2l1o_A1e-135481229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810736.11e-169PREDICTED: transcriptional regulator SUPERMAN-like isoform X1
TrEMBLA0A2I4DUB31e-168A0A2I4DUB3_JUGRE; transcriptional regulator SUPERMAN-like isoform X1
STRINGVIT_05s0049g00070.t012e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-24C2H2 family protein