PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017843-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 224aa    MW: 24532.5 Da    PI: 5.296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017843-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-182979155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  WALNUT_00017843-RA 29 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 79
                        59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-203088IPR016177DNA-binding domain
SMARTSM003803.6E-353093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-303087IPR001471AP2/ERF domain
PfamPF008471.3E-113079IPR001471AP2/ERF domain
PROSITE profilePS5103221.7073087IPR001471AP2/ERF domain
PRINTSPR003671.5E-83142IPR001471AP2/ERF domain
CDDcd000181.60E-193189No hitNo description
PRINTSPR003671.5E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVKTEQKNNP EPSKQMPSIS ASASASIKKK YKGVRMRSWG SWVSEIRAPN QKTRIWLGSY  60
STPEAAARAY DAALLCLKGS KANLNFPITS SSHYIPQDTN SILSPKSIQR MAAAAANSFV  120
ADAATPPSPP SPPRLPPPPP SSSSSVSSSA MSSSPSDQLD DDFSLMPSFD QVNEPTAVTE  180
SAWYNLEDLQ SPKFLDQLLN DSLFDPPMFN YLYEESDIRL WSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142992468ATERF1
3gcc_A3e-142992468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822170.11e-160PREDICTED: ethylene-responsive transcription factor ERF014-like
SwissprotQ9SFE45e-51ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A2I4ERY91e-159A0A2I4ERY9_JUGRE; ethylene-responsive transcription factor ERF014-like
STRINGEOY162381e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-36ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]