PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017109-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 208aa    MW: 22707.8 Da    PI: 8.4966
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017109-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.35e-3341133593
                 TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasecea 75 
                         k +++++hTkv+gRdRR+Rl+  caar+F+L++eLG+++d++tieWLl+qa+p+i++  g+                            +a
  WALNUT_00017109-RA  41 KAPSKDRHTKVNGRDRRIRLPPICAARVFQLTRELGYKTDGETIEWLLRQAQPSIIATIGStinggvassaatfgpsanttI-------DA 124
                         7899*********************************************************898877655553322222220.......22 PP

                 TCP  76 esssssasnsssgkaaks 93 
                         +s+ ss           s
  WALNUT_00017109-RA 125 VSNISSCP---------S 133
                         22222222.........1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-2944143IPR005333Transcription factor, TCP
PROSITE profilePS5136926.1194498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MELEKINDLE MKLSSSSNNQ PTPNSQPIAT SASKAKLLPC KAPSKDRHTK VNGRDRRIRL  60
PPICAARVFQ LTRELGYKTD GETIEWLLRQ AQPSIIATIG STINGGVASS AATFGPSANT  120
TIDAVSNISS CPSSTSSKFP CVAETVHENR DHVVNKCAFR RPKPVLLPFE FGLVSNFDME  180
FSANEIAMLQ SVTDIEEGAK EKDPQKKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016815.15e-54Transcription factor-like protein
TrEMBLA0A061H0A36e-54A0A061H0A3_THECC; Transcription factor-like protein
STRINGGLYMA11G20201.13e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.14e-30TCP family protein