PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016781-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 240aa    MW: 25880.7 Da    PI: 4.639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016781-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1857107155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  WALNUT_00016781-RA  57 PVFRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 107
                         579****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1257107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3158116IPR001471AP2/ERF domain
PROSITE profilePS5103222.74858115IPR001471AP2/ERF domain
SMARTSM003805.5E-3658121IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2158116IPR016177DNA-binding domain
CDDcd000182.28E-3259115No hitNo description
PRINTSPR003676.7E-105970IPR001471AP2/ERF domain
PRINTSPR003676.7E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTEPNNSEAA STSGSSTSSP FEPSSSNSVS ASSKRSKPQS QEQSTPKRPR VDCSKHPVFR  60
GVRMRSWGKW VSEIREPRKK SRIWLGTFST PEMAARAHDV AALSIKGNSA VLNFPQLVHV  120
LPRPLSSTPG DIQAAAVKAA AMVQFDSESS SSSSSSSSLS SLPGGSESEE LGEIVELPNI  180
EGSFELTELR TDFILLDPVD GWVYDPPYGL QGAELCGDFC DQILTLENSI PTNFEGLVWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1659115360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470173.15e-74PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2QNZ75e-74A0A0D2QNZ7_G
STRINGVIT_04s0008g03400.t012e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-48ERF family protein