PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016643-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 332aa    MW: 37524.7 Da    PI: 5.5143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016643-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F++k++++++d++++ li+w + +nsf+vld+ +f++k+Lp yFkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k 
  WALNUT_00016643-RA  10 FVMKTFHMVNDPTTDILITWGRANNSFIVLDPLDFSRKILPAYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKL 91 
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i rkk+
  WALNUT_00016643-RA  92 LLRNIVRKKH 101
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-50699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-35799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-31799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-281099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELNNIVAPF VMKTFHMVND PTTDILITWG RANNSFIVLD PLDFSRKILP AYFKHSNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEWFLRGQK LLLRNIVRKK HGRINSYTQV KHEELDEEEL  120
VMEIARLKEE QTAMDEELRG MNKRLEATEK RPEQMMVFLR KVFAEDPDIL PRMMLQKERT  180
RRIMSSEKKR RLIIPASSPS SSIKTEDEDE EGSQVLISSS PETGFEIGNL REQSSPETPT  240
VLGWLSQRHE VIMGQSPTAQ EPFGCVSIDS PFITASPATT GIGNSPALSP PESSISGYGN  300
GSSSVVSFFT EMVAGSPPPP YPFSLLGGGF QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2479926129Heat shock factor protein 1
5d5v_B4e-2479926129Heat shock factor protein 1
5d5v_D4e-2479926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838842.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV526e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2I4G4K80.0A0A2I4G4K8_JUGRE; heat stress transcription factor C-1-like
STRINGEOY308041e-123(Theobroma cacao)
STRINGcassava4.1_010201m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-81heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]