PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016513-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 336aa    MW: 38002.7 Da    PI: 5.3206
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016513-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.3e-36161082103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F++k+y++++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+
  WALNUT_00016513-RA  16 FVMKTYQMINDPKTDSLITWGRANNSFIVIDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKH 97 
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r++++
  WALNUT_00016513-RA  98 LLRNIVRRRQS 108
                         ******99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5312105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3313105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLAVNGMEAN NVIAPFVMKT YQMINDPKTD SLITWGRANN SFIVIDPLDF SQRILPAYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEW FLRGQKHLLR NIVRRRQSRN SNTQGLKHED  120
VDDEEELVME IARLKEEQKA LDEELRGMNR RLEATERRPE QMMAFLHKVV EDPDIIPRLM  180
LQKERTRRLM SEKKRRLMIP SASSSSSIKT EDEEEGTTQG VNSSSPETGF EIDNFREQSS  240
PDNPTPGWFI QRQVMGSYSI AQEPFGCIAI DSPFLSAPTA TTTGIGNSTA VSPPESNMSG  300
YGNGSSGQVS LFTEMAAGGE ASPPPPYPFS LFRGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-251310817123Heat shock factor protein 1
5d5u_B7e-251310526129Heat shock factor protein 1
5d5v_B7e-251310526129Heat shock factor protein 1
5d5v_D7e-251310526129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805575.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-97HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2I4DEK30.0A0A2I4DEK3_JUGRE; heat stress transcription factor C-1-like
STRINGcassava4.1_010201m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-94heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]