PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015773-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 237aa    MW: 26371.6 Da    PI: 7.9272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015773-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-164998255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr+++ +grWvAeI+d s   ++ r +lg+f++aeeAa a ++a++ l+g
  WALNUT_00015773-RA 49 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDSAEEAALAFDKAARLLRG 98
                        799******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-3148106No hitNo description
PfamPF008476.4E-104998IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-2849106IPR001471AP2/ERF domain
PROSITE profilePS5103220.25749106IPR001471AP2/ERF domain
SMARTSM003806.8E-3249112IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1949107IPR016177DNA-binding domain
PRINTSPR003678.8E-85061IPR001471AP2/ERF domain
PRINTSPR003678.8E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDSLEFPYEP EMYSCKNHAP TPLETEKIHG QEEKVSMKLP KRGNSNGKRY LGVRQRPSGR  60
WVAEIKDSSQ KLRLWLGTFD SAEEAALAFD KAARLLRGRN AKTNFPCHGI VGTHEENCSL  120
LGKNPRLFRL LQHAIMKNHA RSSSLYPPII SWENQNIPGD KVQLDSSYFD VLVEETIVCS  180
SSSASESGSS CGFDHDRNKL SQLSFGSSKV YSSVFVAPSF SASLGQAGEH QKDFQDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1645106163ATERF1
3gcc_A2e-1645106163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874740.11e-120ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2I4HPL71e-104A0A2I4HPL7_JUGRE; ethylene-responsive transcription factor LEP-like
STRINGEOY222472e-84(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-16related to AP2 11