PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015537-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 227aa    MW: 25884.8 Da    PI: 5.0733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015537-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.6e-2176126155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+ +l+g
  WALNUT_00015537-RA  76 KKFRGVRQRP-WGRWAAEIRDPV----RrKRVWLGTFDTAEEAASVYDKAAMELKG 126
                         59********.**********63....45************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-671225IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.44E-3376135No hitNo description
Gene3DG3DSA:3.30.730.102.9E-3177135IPR001471AP2/ERF domain
PfamPF008471.3E-1377126IPR001471AP2/ERF domain
PROSITE profilePS5103224.36877134IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2277134IPR016177DNA-binding domain
SMARTSM003809.2E-3977140IPR001471AP2/ERF domain
PRINTSPR003671.1E-107889IPR001471AP2/ERF domain
PRINTSPR003671.1E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTSQPTLKLL RIIHTDADAT DSSSDEEEQR MVRRVKRHVQ EVRFEQPSIT TFKPQKQEPA  60
RKRTLRSTKS DITHRKKFRG VRQRPWGRWA AEIRDPVRRK RVWLGTFDTA EEAASVYDKA  120
AMELKGPNAV TNFPNPDVST EASVDVDSPK ESSSFSDAAA SPTSVLRYDE PTPLERFCYD  180
NVDVFGFDID VPLSFPDLVL SGKHFGQPEE EDFSDFDVNE FLVDGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2076134463ATERF1
3gcc_A1e-2076134463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874690.13e-86PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-52PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0M4KSE95e-78A0A0M4KSE9_9R
STRINGVIT_06s0004g08190.t014e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-34cytokinin response factor 4