PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015432-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 294aa    MW: 31059.7 Da    PI: 9.8365
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015432-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.92.1e-3959143286
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                         a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+   a+ s+s+++  s
  WALNUT_00015432-RA  59 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGGSVSQQG-TS 143
                         789******************************************************************99854444444433.22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3164149IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01665119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDPKGSTAKQ PQQVPNFLSV PQPPPPQQQQ PNMGENKPAE IKDFQIVIAD KEEGKKQLAP  60
KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ QAEPSIIAAT  120
GTGTIPASAL AAAGGSVSQQ GTSLSAGLHQ KIDDLGGSSI GSGSRTSWAM VGGNLGRPHV  180
ATGLWPPVSG FGFQSSSGPS TTNLGSESSN YLQKISFPGF DLPASNMGPM SFTSILGGSN  240
QQLPGLELGL SQDGHIGVLN PQALSHIYQQ MGHSRVQQQQ HHPPAKDDSQ GSGQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660729.11e-168PREDICTED: transcription factor TCP20
SwissprotQ9LSD56e-89TCP20_ARATH; Transcription factor TCP20
TrEMBLF6H4631e-168F6H463_VITVI; Putative uncharacterized protein
STRINGVIT_14s0068g01690.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.15e-78TCP family protein