PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015410-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 306aa    MW: 33166.7 Da    PI: 7.5782
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015410-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.3e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  WALNUT_00015410-RA   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEQLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGSWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l ++
  WALNUT_00015410-RA  95 LCQTAVEAVLKGS 107
                         *******998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381556.6E-941300IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1063109IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEQ  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GSWQLCQTAV EAVLKGSPIT TITSEAAASD  120
HGPPLKAYDI RHVSKDENSA ASSDPHRVKS RCRFKRSVIK PRASKVVLGA VDDSSRDAKL  180
KWDVGCCGQE LNGLNGSTSH ESSLSHQSSL APNVEGESKD TESMTSVETV EDSVLFLTEP  240
ESIPEPNEQN QESEIPLELT LGFVPVSQTN LVVPVKKRKV ESCASGSTGF GACKMELGLN  300
YRGLIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815450.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-101LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2I4E7T10.0A0A2I4E7T1_JUGRE; LOB domain-containing protein 41-like
STRINGEMJ169441e-149(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-96LOB domain-containing protein 41