PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015385-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 718aa    MW: 77898.9 Da    PI: 6.7775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015385-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-07292312526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC+ Gd C +aHg
  WALNUT_00015385-RA 292 PCPEFRK-GTCRQGDACEYAHG 312
                         8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.5E-1562172IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-783155IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.45E-1484167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02688118IPR002110Ankyrin repeat
PROSITE profilePS5029715.9988163IPR020683Ankyrin repeat-containing domain
CDDcd002043.45E-990163No hitNo description
SMARTSM002483.0E-4123155IPR002110Ankyrin repeat
PROSITE profilePS5008812.048123158IPR002110Ankyrin repeat
SMARTSM003565.4E-5287313IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4292312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784292314IPR000571Zinc finger, CCCH-type
SMARTSM0035631322345IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944322346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MADCGRLRRG GTSMCSGSER KPSQTGFVME GEFGRKEGLQ PNFSVLLELS ASDDLIGFKR  60
AVEEEGYDVD EASLWYGRRI GSKMMGFEER TPLMIAAMFG SKGVLNYILG TGLVDINRAS  120
RSDGATVLHC AAAGGSDASA EVVKLLLDAS ADVNALNANG KRPSDLIALG LNSASNLMKK  180
KLEVMPKGFS GIDDPFVLYD QMGTEMEGQE QQEASTPRVF KDGTEKKEYP VDLSLPDIKN  240
GIYSTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGT  300
CRQGDACEYA HGIFECWLHP AQYRTRLCKD ETGCTRRVCF FAHKPEELRP LYASTGSAVP  360
SPRSFSANNP GLDMGSISPR ALGSPSVLIP SSSTPPMTPS GATSPMGGGT MWQNQSSIVP  420
PSLQLPGSRL KTALSARDLD LDIEFLGLEN HRRRQQQLLD EISGLSSPSG WKSSLAVTLG  480
DRIGELNRLG LVKPTNLDDI FGSLDPALLP QFQGLALDVS APQLQSPTGM KVRQNMNQQL  540
RSSYGTGLSS SPVRASSPFG VDPNGAAAAT AVKSRSAAFA MRSQSFIERS AAKSHSGLSS  600
PGGSASVMHS TLSDWGSPDG KLDWRLQGEE LNKLRKSASF GFRSNGSSYA TSAAMMPATL  660
NEPDVSWVQS LVKDAPPVKH GQLGYEKEQQ QCHLDSGGSE MLPAWVEQLY MEQEQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016084.10.0Zinc finger family protein
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A061GWD40.0A0A061GWD4_THECC; Zinc finger family protein
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein