PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015192-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 320aa    MW: 35920.8 Da    PI: 4.8204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015192-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1976124355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  WALNUT_00015192-RA  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124
                         9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-2275133IPR016177DNA-binding domain
SMARTSM003801.5E-3875138IPR001471AP2/ERF domain
PROSITE profilePS5103223.77575132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3275133IPR001471AP2/ERF domain
PRINTSPR003678.5E-127687IPR001471AP2/ERF domain
CDDcd000184.34E-3376133No hitNo description
PfamPF008476.7E-1276124IPR001471AP2/ERF domain
PRINTSPR003678.5E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCGGAILANI IPPRRHGQRN NMASDLWPNV KLNTFESKLS LFVHDDSAPL KRRQVPSGGV  60
HEEEKKPAKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR  120
KIRGKKAKVN FPNEDKVDGC YFTTASQNHH NPPFLQSIPS FPRQQPQNNT DLNNSYSKGS  180
DFVFDYDLNQ IEGLGYDGFE AIGEANADPI VGSGDESFGS GSGSGSEEAY TSTALLCAND  240
LEVKATEEEK MVEKPEEEEN EVQKLSEELM AYENFMKFYQ IPYYDGQSAP PAPNQESVVA  300
DLWSFNDEEI LSASETSLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-2176132663ATERF1
2gcc_A3e-2176132663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891869.11e-100PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLA0A0C5ACN21e-132A0A0C5ACN2_BETPL; ERF1 protein
STRINGGLYMA10G02080.15e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-32ethylene-responsive element binding protein