PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015049-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 409aa    MW: 45046.3 Da    PI: 7.1898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015049-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1756105255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  WALNUT_00015049-RA  56 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 105
                         59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-2956112IPR001471AP2/ERF domain
SMARTSM003806.1E-3356119IPR001471AP2/ERF domain
PROSITE profilePS5103222.11556113IPR001471AP2/ERF domain
PfamPF008474.7E-1156105IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2156113IPR016177DNA-binding domain
CDDcd000186.65E-3056112No hitNo description
PRINTSPR003672.4E-95768IPR001471AP2/ERF domain
PRINTSPR003672.4E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDEEFRRLNA LTHTPEPISD LHKKCNPTAT TTSMAASATT TTTNKRSLRE ASGTMRYRGV  60
RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGLKART NFVYPTPPPM  120
SATDHLLPPF NYPKQSPPSI KTPHGRQFGS APGWSPLSNP RDTDSLAGSA PQRHSSLNML  180
LLRDLLNSST NPSLVSSPQA LDDHFPYING SSSSTSAFSG CSLLNPSCNS DVADTYVGPS  240
SMSIPLIDNN LSYNTTGVSN RVTTPRIDDS EFFPTESSDS GLLEAVIHRF FPKPSSKKYD  300
CPKTQTCTVE TIPPQIDHGV SFPQSLDAMR KGLKNENFSY SFDQYQGVPQ PFENLNGIKT  360
EALGPRPTMP FGYEMPAVNL QVAGTESMMD DFLQYPELFS AFAARVQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1857112359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A1e-1757112662ATERF1
2gcc_A1e-1757112662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044810.11e-107DORNROSCHEN-like, putative
TrEMBLA0A0C5ACN51e-130A0A0C5ACN5_BETPL; ERF6 protein
STRINGVIT_00s0291g00030.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like