PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014892-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 316aa    MW: 34053.8 Da    PI: 5.2691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014892-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-1770120155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr p+   k +r +lg+f  a eAa a+++a++ ++g
  WALNUT_00014892-RA  70 CNYRGVRQRT-WGKWVAEIRQPN---KGQRLWLGTFSNAVEAACAYDEAARTMYG 120
                         56*****999.**********93...25***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-3070129No hitNo description
PfamPF008472.6E-1070120IPR001471AP2/ERF domain
PROSITE profilePS5103220.78471128IPR001471AP2/ERF domain
SMARTSM003804.2E-3471134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3171129IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2171129IPR016177DNA-binding domain
PRINTSPR003671.2E-87283IPR001471AP2/ERF domain
PRINTSPR003671.2E-894110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGMSSETTIT RKRKSRSGQG GLSVAETLAK WKEKNAQLDS RNDKSIRKGP AIGSKKGCMK  60
GKGGPENSIC NYRGVRQRTW GKWVAEIRQP NKGQRLWLGT FSNAVEAACA YDEAARTMYG  120
SCARLNFPDF SSATTSSGFC SVATQSGLDS TITVNSEVPV VEDIDVKPVS SNLHGEVESR  180
ISTQHAAVTE ASIPNRTTLT KANDEPCDTQ KESTGITSYY GDDGQNYSMK PEAKDEHRGT  240
KQEATGVSNC YGDPGQDYSM DELCDLDELL GLLDNSPFIN IEAILGLGCD AGQLGFPAST  300
CESSQSAKPA DLPYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1871128260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914TRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826826.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A2I4F5A20.0A0A2I4F5A2_JUGRE; dehydration-responsive element-binding protein 2C-like
STRINGXP_002520794.17e-70(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.29e-35DRE-binding protein 2A