PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014009-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 733aa    MW: 79689.3 Da    PI: 6.5469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014009-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07309329526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C++Gd C +aHg
  WALNUT_00014009-RA 309 PCPEFRK-GACRRGDMCEYAHG 329
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.7E-1638184IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.02E-1683190IPR020683Ankyrin repeat-containing domain
PfamPF127962.9E-984153IPR020683Ankyrin repeat-containing domain
SMARTSM002486.7E-484114IPR002110Ankyrin repeat
PROSITE profilePS5029718.5184191IPR020683Ankyrin repeat-containing domain
CDDcd002042.60E-1484162No hitNo description
PROSITE profilePS5008811.007119154IPR002110Ankyrin repeat
SMARTSM002480.11119151IPR002110Ankyrin repeat
SMARTSM003569.5E-6304330IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035635339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MCSGPERSES SSTPSVSTVE ITSNTKDMNN PTVQAESSFS SLLDLAANND VAGFKQSAEK  60
DASLIDEVGL WYVRQKGSKQ IVLEHRTPLM VAATYGSVDV LKFILSHSGV DVNFSCGQDK  120
TTALHCATSG GSINTADVLK LLLLMGADPN RTDANGLRPI DVLIVPPKMQ SMRVAVEELL  180
SNNASDSSFS EHHLRVSISS SCSDSPTLSS SPENGLPSYP SELVSSLMAS KFNDIPVSYA  240
LEKKEYPVDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
TAEELRPLYL STGSAVPSPR SSASAHGVMD MAAAMSLLPG SPSSISALSP SPFAQPMSPS  420
ANNGMSQSSI AWPQPNVPTL SLPGSNLQSS RLRSSFSARD IPPEHLSVMQ DFDAQQHLLN  480
DLTCFSQSWS NNVPANRPGR SKTLTPSNLE ELFCAEISSS PRYSDAAASV VFSPAHKSAV  540
LNQFQQQQSM LSPINTNVFS PKNVDHPLLQ ASFGIQSPGR MSPRSVEPIS PIGSRLAAFA  600
QREKQHQQLH SLSSRDLGSN NQASIGCSPV NSWAKWGSPN GKLDLLVNGD DMGRLRRSSS  660
FELANNGEEP DLSWVQSLVK ESPTELMKEK LAVSASRAAS SGEGLNSNSQ SESIDHSVLG  720
AWLEQMQLDQ LVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052532.10.0CCCH-type zinc finger protein with ARM repeat domain isoform 1
RefseqXP_007052531.10.0CCCH-type zinc finger protein with ARM repeat domain isoform 1
RefseqXP_007052533.10.0CCCH-type zinc finger protein with ARM repeat domain isoform 1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A061DVA60.0A0A061DVA6_THECC; CCCH-type zinc finger protein with ARM repeat domain isoform 1
STRINGVIT_13s0064g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain