PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013383-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 395aa    MW: 41841.4 Da    PI: 8.1289
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013383-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.61.6e-4069187289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++   
  WALNUT_00013383-RA  69 PPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshl 159
                         789******************************************************************9998888888888866666444 PP

                 TCP  89 ...........................k 89 
                                                    +
  WALNUT_00013383-RA 160 rsgyfnpsfstvpqylrntleetsqrrA 187
                         4445555555555554444444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-4173256IPR005333Transcription factor, TCP
PROSITE profilePS5136927.68375129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDGENGIRRP NFPLQLLEIE KKEEEAACSS SHYTSLSIPT GEPSSSTLSA NSTALQLPPE  60
TPKNTNKPPP KRTSTKDRHT KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPAVIAAT GTGTIPANFT SLNISLRSSG STMSAPSHLR SGYFNPSFST VPQYLRNTLE  180
ETSQRRALFP SVAFSSSESS SMLLNFNSTT TGNVNATLQA KQEFVREAPG LDVSAESEGS  240
VGRKRRSEQE YLSQSQMGSY LLQSSAGPIP AGHSQNPAAF WMVTNPSTSC GDSMWTYPSG  300
GNTTGMYRGS MSSGLHFMNF APPMALTLPG QQFGTGIGGM GGGGTATDSH LGVLAALNAY  360
RPIVSAGALE SPASTGTHPH HAGVGDGRDT TSHNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046143.11e-146TCP family transcription factor, putative
SwissprotQ93Z001e-53TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A061EAE71e-146A0A061EAE7_THECC; TCP family transcription factor, putative
STRINGVIT_17s0000g06020.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.15e-47TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14