PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013076-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 543aa    MW: 56955.3 Da    PI: 7.6395
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013076-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.81.3e-401522553112
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++    
  WALNUT_00013076-RA 152 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIDATGTGTIPANFStLNVSLRSSGSTLSAP---- 238
                         6799****************************************************************9997788888887744444.... PP

                 TCP  93 saakskksqksaasalnlak 112
                            +sk++++s + +l+la+
  WALNUT_00013076-RA 239 ---PSKSASHSFHGHLALAH 255
                         ...34444444444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.8E-39156278IPR005333Transcription factor, TCP
PROSITE profilePS5136928.418157211IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MELTDLQSNK QSNTTTTRHH QQHQHQHHHH HHPQQNQSSN SHLVAPFDGR SGGPFMGSIS  60
IQAGLSTHGG SSTSSSSSSL SSSSTSSSPS SSTAPPHLVD ASLAIATRSD SQPSTRSAPL  120
LDSIKKSPNQ QNQQLSIVPT TTTTTATATT TPVKRSTKDR HTKVDGRGRR IRMPATCAAR  180
VFQLTRELGH KSDGETIEWL LQQAEPAIID ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS  240
KSASHSFHGH LALAHHSYLE EGFGHPAFLG FHQQQQQHLM TADQIAEALP SGGGGGSGGG  300
VESGGGGDST ENYMRKRFRE DLFKEDVHNQ PQGSESGGGG DGNSPSGNKH FKSGLQLPKA  360
QVQDQAGSSG LLRPSNILPA TAMWAVAPAP SSGAGSTFWM LPVTAGAGGP SVTTTTTSGA  420
GPSESHMWTF PTAPTASGNT LQAPLHFMPR FNLPGSLEFQ GSRANPLQLG SMLMQQQQQQ  480
QPPSQHLGLG VSESNLGMLA ALNAAYSRGS LNMNSGHQNH PLEHHQHQPQ ATDSGDEGPS  540
SSQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835543.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5183e-83TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A2I4FV690.0A0A2I4FV69_JUGRE; transcription factor TCP8-like
STRINGEOX971600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-61TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]