PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012521-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 259aa    MW: 29059.7 Da    PI: 5.8695
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012521-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.65.8e-56811841101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  WALNUT_00012521-RA  81 QLQNFWANQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 171
                         89******9999******************************************************************************* PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  WALNUT_00012521-RA 172 FDFLVDIVPREDL 184
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.07E-3369175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.5E-3894167IPR009072Histone-fold
PfamPF008081.6E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDQHQQGHGQ PPAIGSAAQV SYGLNPYQSN QMIGASQPGS VVSMQSPSQT AGLSASSAQL  60
AQNQLAYQHI HQQQQQQLQQ QLQNFWANQY QEIEQTSDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGNLPVG GEGLPYYYMP PQHAQQVGAP GMIVGKPVMD QALYGQQTRP  240
YMTQTMWPQM QQEQPPSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-41671814119HapE
4g92_C2e-41671814119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888275.11e-137PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_015888276.11e-137PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B24e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A061EMF21e-135A0A061EMF2_THECC; Nuclear transcription factor Y subunit C-9 isoform 1
STRINGPOPTR_0010s03730.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-78nuclear factor Y, subunit C9