PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012456-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 445aa    MW: 48464.4 Da    PI: 8.1633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012456-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.5e-104873126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C +++rtG C yG++C+++H+
  WALNUT_00012456-RA 48 PGEPDCLYYLRTGLCGYGSNCRYHHP 73
                        5789*********************8 PP

2zf-CCCH36.48.8e-1292116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  WALNUT_00012456-RA  92 QPDCGYFLKTGTCKYGSTCKYHHPR 116
                         789********************96 PP

3zf-CCCH32.31.7e-10137161327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C++++rt  Ck+G+ CkF+H++
  WALNUT_00012456-RA 137 EKPCPYYMRTVSCKFGGACKFHHPQ 161
                         689********************97 PP

4zf-CCCH39.68.9e-13285310227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ tGtCkyG+ Ck++H++
  WALNUT_00012456-RA 285 DQPECRYFMNTGTCKYGSDCKYHHPK 310
                         689*********************96 PP

5zf-CCCH34.63.1e-11327352126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C++++ +G CkyG++Ck+ H+
  WALNUT_00012456-RA 327 PGQAICSYYSMYGVCKYGPTCKYDHP 352
                         5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1884775IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-54774IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-74973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-589116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.73789117IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-495116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038136161IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4138160IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.643283311IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10285310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7286312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6289310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6324352IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892326354IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPENRQVQKN ATHNHSDNTI EEAFWRLKIN GNLEGGGAVQ SGPYPDRPGE PDCLYYLRTG  60
LCGYGSNCRY HHPAYVSQGA PYSVELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRRG  120
AGPVSFNILG LPMRQEEKPC PYYMRTVSCK FGGACKFHHP QPASLGTLLP VAGHGAFGSM  180
GSTVVPSPGQ PYAGGLPAWS FPRVSYISSP RLPGPESYMP VVLPPPGIVS AQGWNTYMGN  240
MSPLSPNSST TLLSSNFIYN PKNLGELGSR GMLPATTPSL PERPDQPECR YFMNTGTCKY  300
GSDCKYHHPK ERIAQSVPIL PSLPLRPGQA ICSYYSMYGV CKYGPTCKYD HPVVAYPHNY  360
SLGLPNVPML DSSLISYPRS MSTAHSSESS PSKSSRFPDW VQKHDAASNK HEKSDTKTSE  420
DSAEEAGSSP HSVPSSAEPL PDQSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881220.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLM5WRX40.0M5WRX4_PRUPE; Uncharacterized protein
STRINGVIT_12s0059g01450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-111C3H family protein