PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012360-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 201aa    MW: 21678.2 Da    PI: 9.3181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012360-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1865115155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  WALNUT_00012360-RA  65 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIGAALAYDEAARAMYG 115
                         56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-1365115IPR001471AP2/ERF domain
CDDcd000183.92E-3265124No hitNo description
SuperFamilySSF541711.18E-2066123IPR016177DNA-binding domain
SMARTSM003801.3E-3666129IPR001471AP2/ERF domain
PROSITE profilePS5103222.02366123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3266124IPR001471AP2/ERF domain
PRINTSPR003672.7E-96778IPR001471AP2/ERF domain
PRINTSPR003672.7E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRKLDKTHTR GDGSRSLASI LEKWKEYNEQ LDACNNEHKP VRKVPAKGSK KGCMKGKGGP  60
ENSRCNYRGV RQRTWGKWVA EIREPNRGSR LWLGTFPTAI GAALAYDEAA RAMYGSSARL  120
NFPNIKISCF SKDSTEDSSL AAIPSVSSSG AVSSGSESTT TSNDSEVCAT TGIDLNRNSP  180
SVKCDDGVGE SKINCSPPQV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1966123260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821937.11e-146PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR21e-52DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2I4ERB31e-145A0A2I4ERB3_JUGRE; putative dehydration-responsive element-binding protein 2H
STRINGXP_002520794.18e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-44DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]