PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012360-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 201aa    MW: 21678.2 Da    PI: 9.3181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012360-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1865115155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  WALNUT_00012360-RA  65 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIGAALAYDEAARAMYG 115
                         56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-1365115IPR001471AP2/ERF domain
CDDcd000183.92E-3265124No hitNo description
SuperFamilySSF541711.18E-2066123IPR016177DNA-binding domain
SMARTSM003801.3E-3666129IPR001471AP2/ERF domain
PROSITE profilePS5103222.02366123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3266124IPR001471AP2/ERF domain
PRINTSPR003672.7E-96778IPR001471AP2/ERF domain
PRINTSPR003672.7E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRKLDKTHTR GDGSRSLASI LEKWKEYNEQ LDACNNEHKP VRKVPAKGSK KGCMKGKGGP  60
ENSRCNYRGV RQRTWGKWVA EIREPNRGSR LWLGTFPTAI GAALAYDEAA RAMYGSSARL  120
NFPNIKISCF SKDSTEDSSL AAIPSVSSSG AVSSGSESTT TSNDSEVCAT TGIDLNRNSP  180
SVKCDDGVGE SKINCSPPQV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1966123260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086678.14e-74PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ8LFR27e-54DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLI3T5003e-78I3T500_LOTJA; Uncharacterized protein
STRINGGLYMA12G32400.13e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-44DRE-binding protein 2A