PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012071-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 234aa    MW: 25688.8 Da    PI: 7.4133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012071-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-193988255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  WALNUT_00012071-RA 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSLEAAMAYDAAARKLYG 88
                        69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.80E-203898No hitNo description
Gene3DG3DSA:3.30.730.101.1E-293997IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-213996IPR016177DNA-binding domain
PfamPF008475.3E-143988IPR001471AP2/ERF domain
SMARTSM003801.1E-3339102IPR001471AP2/ERF domain
PROSITE profilePS5103221.7593996IPR001471AP2/ERF domain
PRINTSPR003671.7E-94051IPR001471AP2/ERF domain
PRINTSPR003671.7E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLKSDMGLGE RKQVKKLAQA SSRKGCMRGK GGPENAMCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFD TSLEAAMAYD AAARKLYGSV AKLNLPNLSS TINSRHPATS NKNQIANIEN  120
QSQVMHNSGA TATTSSPNNS SPIVRDIEDV KPQVYQNSST MSFTDESVET QEKQAAEYNV  180
KLGENEEGID GLWGNINPSF PVFDETIWAE AAMSLDFPFM GDSGIFAGNL IGRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-174096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-174096663ATERF1
3gcc_A4e-174096663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821084.11e-176PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2I4ENW01e-174A0A2I4ENW0_JUGRE; dehydration-responsive element-binding protein 2D-like
STRINGGorai.009G197800.12e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-48ERF family protein