PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010505-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GeBP
Protein Properties Length: 404aa    MW: 45779.4 Da    PI: 4.5709
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010505-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.85.9e-32136231397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         ++rlw++eDei lLqG ++  +++g    ++d+  fye++ +++++ ++k+ql++K+rrLK+K+++  +k++ +ke+sf+++hdq +fe+s
  WALNUT_00010505-RA 136 SHRLWTNEDEIQLLQGYLEHPTSRGNiIHHNDTALFYEQIGSKLQVGFNKNQLLDKLRRLKRKYRNALEKINADKEFSFKSAHDQAAFEIS 226
                         68***********************955566************************************************************ PP

              DUF573  93 kkiWg 97 
                         +kiWg
  WALNUT_00010505-RA 227 RKIWG 231
                         ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-30137231IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MLSSFVDWIV FSSSSSSSSS YSSSTSSRYD HEDNDQVIIS AETEDNDEQN DVILDDVATN  60
GDTIPVGIAV TDASAAVTVA VPATEALIHD HPPPITTTII NSRKRRRIDH YDEDDDDILL  120
AAQEEKKHLD DSRRPSHRLW TNEDEIQLLQ GYLEHPTSRG NIIHHNDTAL FYEQIGSKLQ  180
VGFNKNQLLD KLRRLKRKYR NALEKINADK EFSFKSAHDQ AAFEISRKIW GDTRRMDKPG  240
VLEENTLDDG LDQLSPTTLN HLNLVDVKVE NDEVLNDLRL RKRTKSGHAS KNRSISNCRN  300
YGNNNDDVDD NNIDNGNATR LIEDTVGSCL SPWFKELLSN AFCPMPLSGT LQGESTMSLQ  360
GEEQMDENGR EQRILELERY SKQLELVQDQ INVALQELQS NIRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106RKRRR
2103107KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875499.16e-73PREDICTED: mediator-associated protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-37DNA-binding storekeeper protein-related transcriptional regulator