PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010091-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 186aa    MW: 20517.8 Da    PI: 7.7245
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010091-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-2060111256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrd s ng  +r++lg+f taeeAa a+++a+ +++g+
  WALNUT_00010091-RA  60 HYRGVRRRP-WGKYAAEIRDSSRNG--ARIWLGTFTTAEEAALAYDRAAFRMRGA 111
                         8********.**********55465..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-3159119IPR001471AP2/ERF domain
CDDcd000187.86E-3159119No hitNo description
PROSITE profilePS5103223.53860118IPR001471AP2/ERF domain
SMARTSM003803.4E-3660124IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2360120IPR016177DNA-binding domain
PfamPF008474.6E-1460110IPR001471AP2/ERF domain
PRINTSPR003674.9E-116172IPR001471AP2/ERF domain
PRINTSPR003674.9E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVLASQSTEL PLNENDSQDM VIFDVLNEAM SLNSSYVPQR HQMMNTSNSL EPARNIAKKH  60
YRGVRRRPWG KYAAEIRDSS RNGARIWLGT FTTAEEAALA YDRAAFRMRG AKALLNFPAE  120
VVAASATLPR FHPNPGRGIG LNRQDSESSG STSSHSMGTS RIESESSCST GGEAQDHIRV  180
EYNPEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-3359121163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-3359121466ATERF1
3gcc_A4e-3359121466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874202.12e-73PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
RefseqXP_015874196.12e-73PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046812e-61PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLM5WVE93e-68M5WVE9_PRUPE; Uncharacterized protein
STRINGVIT_10s0003g00580.t012e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.19e-32ethylene responsive element binding factor 2