PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009899-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 445aa    MW: 48389 Da    PI: 8.0445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009899-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-104873126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C +++rtG C yG++C+++H+
  WALNUT_00009899-RA 48 PGEPDCLYYLRTGLCGYGSNCRYNHP 73
                        5789*********************8 PP

2zf-CCCH36.48.8e-1292116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++Ck++H++
  WALNUT_00009899-RA  92 QPDCGYFLKTGTCKYGSTCKYHHPR 116
                         789********************96 PP

3zf-CCCH375.8e-12138161427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C+++++tG Ck+G  CkF+H++
  WALNUT_00009899-RA 138 KQCSYYMQTGLCKFGVACKFHHPQ 161
                         67********************97 PP

4zf-CCCH41.81.8e-13284309227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ tGtCkyG+ CkF+H++
  WALNUT_00009899-RA 284 DQPECRYFMNTGTCKYGSDCKFHHPK 309
                         689*********************96 PP

5zf-CCCH35.41.9e-11327351226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G CkyG++CkF H+
  WALNUT_00009899-RA 327 GQAVCSYYSMYGLCKYGPTCKFDHP 351
                         7899********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2534775IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-54774IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-55273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0015372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.73789117IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-589116IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-495116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554134162IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.699282310IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6282309IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-11284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7285311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6288309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76325353IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7325352IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPDNRQVQKN ATPNQSANPI EEAFWRLKIN DNQEGDGAAQ SAPYPDRPGE PDCLYYLRTG  60
LCGYGSNCRY NHPSYVSQGS LYSVELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRRG  120
AGPVSFNVVG LPMRQEEKQC SYYMQTGLCK FGVACKFHHP QPASLGTVLP VTGHADVGSM  180
GSTVMPSSGL PYTGGLPAWS LPRVPYISGP RFPGPETYMP AFLPQGIVPA QGWNTYMGNM  240
NPMSPNGSTA VLYSNFIYNS KNLGESASRG LSSGTTASLP ERPDQPECRY FMNTGTCKYG  300
SDCKFHHPKE RIAQSGANPP GLPLRPGQAV CSYYSMYGLC KYGPTCKFDH PVVAVPHNYS  360
LGLPNLAMLD SPRFGNPRSM STARSSETSP SKSSKFPDWV QKHDAASNKN EKSDTKTSED  420
SPEEAGSSPH SIQSSAAEPL HDQSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881220.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLM5WRX40.0M5WRX4_PRUPE; Uncharacterized protein
STRINGVIT_12s0059g01450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-118C3H family protein