PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009629-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 386aa    MW: 42804.6 Da    PI: 6.1459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009629-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.8e-21185235256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  WALNUT_00009629-RA 185 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 235
                         59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.61E-34184244No hitNo description
PROSITE profilePS5103223.235185242IPR001471AP2/ERF domain
SMARTSM003802.3E-38185248IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-23185243IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32185243IPR001471AP2/ERF domain
PfamPF008472.0E-14186235IPR001471AP2/ERF domain
PRINTSPR003673.9E-11186197IPR001471AP2/ERF domain
PRINTSPR003673.9E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAAMDIYNS SSTSFFSDPL GEELMKALVP FMKSASSTSS ITTSSPPSPS TSSPSSSLSF  60
ASYPSYSFST IFPSHPNLYP DFCSPSSTHM FSEGFSSHNQ MDHEQAGTIG LNHLTPSQIL  120
QIQAQIQLQQ QQQQRQQQIA AMASASLQNQ RLSHWQQQNT HALDFLSPKT IPMKHVGTPS  180
KPAKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDKAAY KLRGEFARLN  240
FPHLKHQGAH ISGEFGDYKP LHSSVDAKLQ AICQNLVNSQ KQVKTEEPCF VPDVKPVISA  300
ALGESSVFDE SQRTELRREH GVFGSEEFKV ENSSLSPALS DESSSFVGSS SPESDITFLD  360
FSDSQDETEN FPLEKFPSVE IDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22184242160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850809.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A2I4H3U70.0A0A2I4H3U7_JUGRE; ethylene-responsive transcription factor RAP2-4-like
STRINGPOPTR_0005s07900.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-56related to AP2 4