PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009567-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 326aa    MW: 38288 Da    PI: 9.4374
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009567-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.71.6e-2345147187
            trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                         +W++qe+++ i++r e+e +   ++                 +  +lWe vs +m+erg++r+p+qCk+kw+nl +ryk ++  e +  ++
  WALNUT_00009567-RA  45 QWSQQETREFIAIRAEVEMERDLTAatnantisgvpnsgkrsKTTALWEVVSGRMSERGYKRTPEQCKCKWKNLLNRYKLVQGKETSD-PD 134
                         7**************7666655322235667777777787778899****************************************96.99 PP

            trihelix  75 ssstcpyfdqlea 87 
                         ++++cp+fdql+a
  WALNUT_00009567-RA 135 NVRQCPFFDQLHA 147
                         999********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002542121IPR001005SANT/Myb domain
PfamPF138374.2E-2144147No hitNo description
CDDcd122031.78E-1744123No hitNo description
PROSITE profilePS500906.89946119IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MFGGRADVEG LGRMNMMKSV TLLNPNPNPK PPLERVGPQT PTQPQWSQQE TREFIAIRAE  60
VEMERDLTAA TNANTISGVP NSGKRSKTTA LWEVVSGRMS ERGYKRTPEQ CKCKWKNLLN  120
RYKLVQGKET SDPDNVRQCP FFDQLHAVFT ERAKNMQRLL LESEAGSSQA KKSFKRSTGD  180
RSSDEISDEE DEDEYDSEGE RPAKSNSRRR KAERLTLDKP SRATNMGHAS TSKNSDIQEL  240
LKEFFQQQHR MEMQWREMME RRVQERVFFE QEWRQTMAKL ERERIMAEQT WREREEQRRM  300
REETRAERRD ALLTTLLNKL LHENNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521444.11e-120PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0S3T3G01e-120A0A0S3T3G0_PHAAN; Uncharacterized protein
TrEMBLA0A0L9URU21e-120A0A0L9URU2_PHAAN; Uncharacterized protein
STRINGGLYMA01G35370.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.16e-17Trihelix family protein