PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009298-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 157aa    MW: 17391.9 Da    PI: 7.767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009298-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-201970256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr+++ +g+++AeIrdps ng  +r +lg+f+tae+Aa+a+++a+ +++g+
  WALNUT_00009298-RA 19 TYRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEDAARAYDRAAYAFRGH 70
                        69*******.**********98887..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-241978IPR016177DNA-binding domain
SMARTSM003801.3E-351984IPR001471AP2/ERF domain
PfamPF008472.8E-141970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-321978IPR001471AP2/ERF domain
PROSITE profilePS5103224.8161977IPR001471AP2/ERF domain
CDDcd000184.95E-192078No hitNo description
PRINTSPR003671.8E-112031IPR001471AP2/ERF domain
PRINTSPR003671.8E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MERKTVVGNN EEKGRETPTY RGVRRRPWGK FAAEIRDPSR NGARLWLGTF DTAEDAARAY  60
DRAAYAFRGH LAILNFPNEH QYHQSPSSPS SSSSASLTSS SSDIRKNKDP RGTGSSSSTS  120
NTAGQQGEVI ELEYLDNTLL EELLETQKDR PGKSNDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-291480975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825240.11e-113PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2I4F0S11e-112A0A2I4F0S1_JUGRE; ethylene-responsive transcription factor ERF098-like
STRINGPOPTR_0005s24450.11e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]