PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009056-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 375aa    MW: 40067.4 Da    PI: 7.1606
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009056-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.24.8e-41601902112
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+ + s +   
  WALNUT_00009056-RA  60 PPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGTSMSVPsql 150
                         789****************************************************************999887667777777655555555 PP

                 TCP  89 ............................kaaksaakskksqksaasalnlak 112
                                                     +            + +++ ln++ 
  WALNUT_00009056-RA 151 rssyfnpnfsmqqqrrssslfpgiglssE------------SGTSNLLNFQS 190
                         44455555555555553334444443331............33333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-4165224IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92366120IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEGGDDLHRP NFPFQLLEKK EDEPCSTSAY PSLAICPAAD ADANAIQPST AAEPSSKKPP  60
PKRASTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAVIAA  120
TGTGTIPANF TSLNISLRSS GTSMSVPSQL RSSYFNPNFS MQQQRRSSSL FPGIGLSSES  180
GTSNLLNFQS SSSMNSMLQA KQELRDATSS LDMSETTEES IGGRKRRPPE QQDLMGSYLL  240
QSSTGAIPAS HGQIPANFWM LANSNNQVMS GDPIWTFPSV NNSAAALYRS NMSSGLHFMN  300
FPPPAVALMP GQQLGSGISG GGNSSSMSEG HLNMLAGFNP YRPISGNSVS ESQASGSHSH  360
HGGGDDRHDT TSHHS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472329.11e-175PREDICTED: transcription factor TCP14-like
SwissprotQ93Z003e-70TCP14_ARATH; Transcription factor TCP14
TrEMBLF6GT891e-175F6GT89_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g06020.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.14e-61TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14