PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009016-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 323aa    MW: 35646.9 Da    PI: 6.8547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009016-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048250272123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k+F +   L  H r+H
  WALNUT_00009016-RA 250 FECPFCDKVFGSGQALGGHKRSH 272
                         89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-5327IPR007087Zinc finger, C2H2
SMARTSM003550.24426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7214272No hitNo description
PfamPF139121.7E-7214233IPR007087Zinc finger, C2H2
SMARTSM0035546214234IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-4246272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055250272IPR007087Zinc finger, C2H2
PfamPF139122.1E-11250272IPR007087Zinc finger, C2H2
SMARTSM003550.015250272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MERHKCKLCF RTFANGRALG GHMKAHLANL PLPPKPQQLG GPTEPALSSS SSSGEEQEED  60
QSLGEEAEDK ALIYGLRENP KKSFRLADPE FSFAVDAGSV VQDRESETES KNPTRQRSKR  120
NRKPGVSEIQ SQNVEMKKPK PSSSLVDSPE LLSSVSDTSP EEDVAMCLMM LSRDIWMRNN  180
EEQDEEQGKQ VQRSVKVKVR ESEEIKIRKV RGKHRCDKCK KTFRSFQALG SHKTICCRDE  240
TGNDGNERIF ECPFCDKVFG SGQALGGHKR SHLLGSSSTT TTTTTTIVTN AATSSPLKSE  300
TSAIDLNLPA PVEEDVFSVV SDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RQRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819220.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2I4EIJ70.0A0A2I4EIJ7_JUGRE; zinc finger protein ZAT4-like
STRINGcassava4.1_011850m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-43C2H2-like zinc finger protein