PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008998-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 280aa    MW: 31176.8 Da    PI: 7.8352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008998-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-18100149255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  WALNUT_00008998-RA 100 TYRGVRIRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 149
                         69****888.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.827100157IPR001471AP2/ERF domain
SMARTSM003804.8E-36100163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-31100158IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-21100158IPR016177DNA-binding domain
PfamPF008471.1E-11100149IPR001471AP2/ERF domain
PRINTSPR003677.9E-10101112IPR001471AP2/ERF domain
CDDcd000182.87E-31101159No hitNo description
PRINTSPR003677.9E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRFSHTSVIS CVYYIFSCYS PNLPFFLMEE TRGASDSKSQ TTSTSSSSNT SSHSSNSFPS  60
QTNIAAEFTV QNSSKRVQEA KDGDENKKRV KSRDDGKHPT YRGVRIRQWG KWVSEIREPR  120
KKSRIWLGTF STPEMAARAH DVAALTIKGQ SAFLNFPELA QELPRPASSS PKDIQAAAAK  180
AAAMNFPKSH EAAKAVLSQS MLLTDPYSPC STMASQDTRD SSTSPSNDIK DDAFLDLPDL  240
LLDVRNQINA FCYPSTWQLT GTEPVDTCHR IEEPFFWGCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-1696157363ATERF1
2gcc_A4e-1696157363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039780.13e-80Integrase-type DNA-binding superfamily protein, putative
SwissprotQ8LBQ75e-57ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A061G3Z03e-80A0A061G3Z0_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGPOPTR_0001s15550.12e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-49ERF family protein