PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008650-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 383aa    MW: 42303 Da    PI: 10.0906
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008650-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.1e-083282755
                 AP2  7 rwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++++gr++A+++d s++   ++ k  + g ++ +e+Aa+a++ a++k++g
  WALNUT_00008650-RA 32 TRHRWTGRYEAHLWDNSSRRegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 82
                        589************77744565535555.779999**************98 PP

2AP247.83.5e-15125176155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00008650-RA 125 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 176
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.671990IPR001471AP2/ERF domain
CDDcd000182.17E-143292No hitNo description
SuperFamilySSF541711.57E-113292IPR016177DNA-binding domain
PfamPF008471.1E-43282IPR001471AP2/ERF domain
SMARTSM003802.8E-143296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-103391IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-18125186IPR016177DNA-binding domain
CDDcd000181.61E-24125186No hitNo description
PfamPF008474.4E-10125176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18126185IPR001471AP2/ERF domain
PROSITE profilePS5103219.045126184IPR001471AP2/ERF domain
SMARTSM003801.5E-33126190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MKKLILLIMA RGSLEHKMTK KCPFSFMKKK NTRHRWTGRY EAHLWDNSSR REGQSRKGRQ  60
GGYDKEEKAA RAYDLAALKY WGKTTTTNFP VSNYEKELED MKNMSRQEFV ASLRRKSSGF  120
SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV  180
TNFDMSRYDV KSIANSNLPI GGGKSKTSSE SVSDSKSIDG SRSDDRDLSS ASSVAFASQP  240
STSALSFAIP IKQDPSDYWS LLGYQNSSLN NAKNASVAPH LFQCSVNGSA YHSNTTLPFS  300
MDFSATPSSA NESSSGFFNG GYAQHQNNAT PIQYATPVAI SSNINGYNES SSSYGSSWIG  360
PALHTFQTHA KPTLFQTPIF GIE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831020.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-123AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB9N3031e-178B9N303_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18330.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-109AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Asamizu E, et al.
    Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones.
    DNA Res., 1998. 5(6): p. 379-91
    [PMID:10048488]
  2. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]