PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008625-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 198aa    MW: 22366.1 Da    PI: 4.8573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008625-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-184393155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr ++ +gr+v+eIr p++   ++r++lg+fg++e+Aa+a++ a+  l+g
  WALNUT_00008625-RA 43 TRFRGVRKRS-WGRYVSEIRLPRQ---KTRIWLGSFGSPEMAARAYDSAAFFLKG 93
                        589****888.**********943...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-114393IPR001471AP2/ERF domain
CDDcd000189.88E-2843103No hitNo description
SMARTSM003809.9E-3144107IPR001471AP2/ERF domain
PROSITE profilePS5103221.02244101IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1944102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2844102IPR001471AP2/ERF domain
PRINTSPR003674.4E-84556IPR001471AP2/ERF domain
PRINTSPR003674.4E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSTIEEEPEP THQFKPTSRF DSDLSSSRGS NDKKPIRQRR TDTRFRGVRK RSWGRYVSEI  60
RLPRQKTRIW LGSFGSPEMA ARAYDSAAFF LKGNSACLNF PDLAEWLPRP ESCSRRDIQS  120
AAAKAALFKV ADDPPSMMTQ AEPEISGSED FWCEFDIDVD FDLGTTPFVE VKEAPLLTPL  180
LGFDDAAIEE SLITSYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1445101663ATERF1
3gcc_A6e-1445101663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872651.12e-58PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_015870839.12e-58PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_015870792.12e-58PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_015870745.12e-58PREDICTED: ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0S3SEW23e-50A0A0S3SEW2_PHAAN; Uncharacterized protein
TrEMBLA0A0L9V8B83e-50A0A0L9V8B8_PHAAN; Uncharacterized protein
STRINGPOPTR_0019s09530.13e-46(Populus trichocarpa)
STRINGPOPTR_0409s00200.15e-46(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.15e-34ERF family protein