PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008496-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 253aa    MW: 28459.3 Da    PI: 6.5066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008496-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.7e-56721751101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  WALNUT_00008496-RA  72 QLQSFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 162
                         89******99999****************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  WALNUT_00008496-RA 163 FDFLVDIVPREDL 175
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.69E-3365166IPR009072Histone-fold
PfamPF008081.5E-2194157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.8E-3895172IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDQQGHSQPP PMGAVGGGSQ LPYAINPYQT NQMTGQLTHP SVGAQPAGVQ LAQHQLAYQH  60
IHQQQQQQLQ QQLQSFWANQ YQEIEKVTDF KNHSLPLARI KKIMKADEDV RMISAEAPVI  120
FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV PREDLKDEVL  180
ASIPRGTMPV GGHADALPYC YMPPHHAPPV GTPGMIMGKP AMDPAMYAQQ PHPYMAQQMW  240
QQAPEQQQSP SDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C7e-4182172294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B7e-4182172294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C8e-41581724119HapE
4g92_C8e-41581724119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875195.11e-152PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.11e-152PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875193.11e-152PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B26e-94NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLI3TAX91e-144I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
TrEMBLG7KYQ41e-143G7KYQ4_MEDTR; Nuclear transcription factor Y protein
STRINGVIT_14s0128g00250.t011e-137(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.46e-86nuclear factor Y, subunit C9