PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007621-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 269aa    MW: 28100.3 Da    PI: 10.1456
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007621-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.6e-3731131389
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                         +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++   + s+ +++  s +    
  WALNUT_00007621-RA  31 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV-SVSVRAGG-GSTSlsss 119
                         79*************************************************************9999977731.22222222.11112221 PP

                 TCP  89 ...........k 89 
                                    +
  WALNUT_00007621-RA 120 ttssslshsldH 131
                         222222233330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093690IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-3336167IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSNSDVANNV VTNGALLDPR QQPPSNGALS VKKPPSKDRH SKVDGRGRRI RMPIICAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSVSVRAG GGSTSLSSST  120
TSSSLSHSLD HKPLLGPAPF ILGKRVRADE DGDGKDEGSG VNVGHTMGSV LGSAASGGFW  180
AVPARPDFWS FAAAAAAAAP SHEMVVQAQA AQQQQPSMFV THHHHHQQQQ PMGEASAARV  240
GNYLPGHLNL LASLSGAQGS SGRREDDPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043253.11e-116TCP family transcription factor
SwissprotQ9FMX24e-93TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A061E2201e-116A0A061E220_THECC; TCP family transcription factor
STRINGGLYMA10G43190.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-61TCP family protein