PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007194-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 431aa    MW: 46215.9 Da    PI: 7.2728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007194-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-10163187226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+G++CkF H+
  WALNUT_00007194-RA 163 GEKDCAHYMLTRTCKFGESCKFDHP 187
                         7889********************8 PP

2zf-CCCH38.71.6e-12280304327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++lC f+++tG Ck+G++CkF+H++
  WALNUT_00007194-RA 280 EPLCAFYLKTGNCKFGATCKFHHPK 304
                         79*********************96 PP

3zf-CCCH36.21e-11361382526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+f+++tG CkyG++C+++H+
  WALNUT_00007194-RA 361 DCPFYLKTGSCKYGATCRYNHP 382
                         6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.263161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034161188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5162188IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8163187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042277305IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6277304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6280305IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10280304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-6282303IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5356383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089361384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5361383IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9361382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4362381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MANPLYGYNP SSYGAATAAA ASTTSGLSVY TSRSLTDAYL SDPTTLRYLG SDLSSKYSLS  60
DQRLRTSSSS TATASMYEAL RYSSTPSAAA HLVSQGSWPS ADVAADSLLA GLKRPSEVLY  120
HQTLLGAHSA IGQTEAWYST NSLAKRPRFD NASNLPIYPQ RPGEKDCAHY MLTRTCKFGE  180
SCKFDHPIWV PEGGISDWKE VIRDGNHKDL GSFPMATVGI MCRIKALLNK LGALGNDQYS  240
RLDMVPTHAT SESLPERPGE PDCPGASEND GTALPERPSE PLCAFYLKTG NCKFGATCKF  300
HHPKDIQIPL TGQQNGNGEQ TELTISTEGA IGDAKLYSPL AYTPASICNS KGLPVRLGEL  360
DCPFYLKTGS CKYGATCRYN HPDRNAINPP AAVLGHPIVT SPATHLNIGV VNPAASIYQT  420
IDPRLTQPTG P
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818004e-74LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132554e-74LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830434.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X3
SwissprotQ941Q31e-109C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2I4FFK50.0A0A2I4FFK5_JUGRE; zinc finger CCCH domain-containing protein 37 isoform X3
STRINGVIT_19s0085g01180.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-108floral homeotic protein (HUA1)