PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006560-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 165aa    MW: 18520.8 Da    PI: 10.3064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006560-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-192677256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd s    + +r +lg+f tae+Aa+a+++a+ +l+g+
  WALNUT_00006560-RA 26 RYRGVRRRP-WGKFAAEIRDSSR---HgARMWLGTFNTAEDAARAYDRAAFNLRGH 77
                        6********.**********432...25**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-142677IPR001471AP2/ERF domain
PROSITE profilePS5103223.6172684IPR001471AP2/ERF domain
CDDcd000182.44E-162685No hitNo description
SuperFamilySSF541714.45E-232686IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-302686IPR001471AP2/ERF domain
SMARTSM003803.6E-362690IPR001471AP2/ERF domain
PRINTSPR003674.9E-112738IPR001471AP2/ERF domain
PRINTSPR003674.9E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDEPRKGKED TREKEDQKGS TREEVRYRGV RRRPWGKFAA EIRDSSRHGA RMWLGTFNTA  60
EDAARAYDRA AFNLRGHLAT LNFPHEYYPQ VAGSPPKFSS LPSSSFSPLA PSGSSDRGST  120
TTSSNSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFPP AVPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-311887675Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814217.12e-87PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A2I4E4934e-86A0A2I4E493_JUGRE; ethylene-responsive transcription factor ERF098-like
STRINGXP_008224367.15e-45(Prunus mume)
STRINGEMJ254696e-45(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-23ERF family protein