PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006399-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 267aa    MW: 28813.5 Da    PI: 7.3195
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006399-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.1e-284107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C +dC+++p++     p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+  P+yG++g++++++++
  WALNUT_00006399-RA   4 SCNGCRVLRKGCGEDCTIRPCLqwirtPESQANATVFLAKFYGRAGLINLINAGPEHHRPEIFKSLLYEACGRVVSPIYGSTGLFSSGSWN 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l++ ++e++l+++
  WALNUT_00006399-RA  95 LCHDAVEAVLRGA 107
                         *****99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3223109IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGEDCT IRPCLQWIRT PESQANATVF LAKFYGRAGL INLINAGPEH  60
HRPEIFKSLL YEACGRVVSP IYGSTGLFSS GSWNLCHDAV EAVLRGAPIM KVLSESVVNP  120
PVQACDIRHV VKPAPSDQLH KVKKSRSKVK SSVVKPQPKA KPEVDSASIQ SPGNSGSDRQ  180
LWCDNDLGVS VSRNPSPGGN STETDCISAE TVEASLFAKP DEQADGCSDV DLELTLAFGN  240
SEHVKREEQN NGYDNDTCKK LVGSQAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830073.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8863e-68LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2I4FEJ70.0A0A2I4FEJ7_JUGRE; LOB domain-containing protein 41-like
STRINGEOY210248e-86(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-69LOB domain-containing protein 41