PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006190-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 335aa MW: 36461 Da PI: 6.5112

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006190-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.8	2.4e-35	28	123	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l+++ WALNUT_00006190-RA 28 TGRKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDNLAELppwhppgtsnatpeqpdpdggtaemti 118 79**************************************************************888887665443332222222111111 PP TCP 66 ssssaseceaesssssasnsss 87 ++s+ WALNUT_00006190-RA 119 A-----------------EQSE 123 0.................1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.6E-32	28	101	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.29	30	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MQSTETMGMK STGGEIVQVQ GGHIVRSTGR KDRHSKVYTA KGLRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKSAIDNLAE LPPWHPPGTS NATPEQPDPD GGTAEMTIAE 120 QSESSGYNFQ LHRQLAENPD DNSTFIPPSL DSEAITDTLK SLFPTSSATS SINFQSYPPD 180 ITSRASNPTQ DLGLSLHSFQ DHSAPNGQTL FAGSASVGFD ANYQRMVAWN SDASAENRGG 240 FVFSSPALPQ QALLGSPFSQ RGPFQSSFDP SARAWDECPT AASHPQKTQP IHQSSIFGSR 300 FVSEPSFCIP GIIQGEEEQS AHSHRPSSSR TNSRH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525139.1	1e-143	PREDICTED: transcription factor TCP4
Swissprot	Q9MAH8	7e-78	TCP3_ARATH; Transcription factor TCP3
TrEMBL	B9SGM0	1e-143	B9SGM0_RICCO; Transcription factor, putative
STRING	GLYMA13G36840.2	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	4e-79	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3