PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006190-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 335aa    MW: 36461 Da    PI: 6.5112
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006190-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.4e-3528123287
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l+++                           
  WALNUT_00006190-RA  28 TGRKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDNLAELppwhppgtsnatpeqpdpdggtaemti 118
                         79**************************************************************888887665443332222222111111 PP

                 TCP  66 ssssaseceaesssssasnsss 87 
                                           ++s+
  WALNUT_00006190-RA 119 A-----------------EQSE 123
                         0.................1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3228101IPR005333Transcription factor, TCP
PROSITE profilePS5136932.293088IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQSTETMGMK STGGEIVQVQ GGHIVRSTGR KDRHSKVYTA KGLRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIDNLAE LPPWHPPGTS NATPEQPDPD GGTAEMTIAE  120
QSESSGYNFQ LHRQLAENPD DNSTFIPPSL DSEAITDTLK SLFPTSSATS SINFQSYPPD  180
ITSRASNPTQ DLGLSLHSFQ DHSAPNGQTL FAGSASVGFD ANYQRMVAWN SDASAENRGG  240
FVFSSPALPQ QALLGSPFSQ RGPFQSSFDP SARAWDECPT AASHPQKTQP IHQSSIFGSR  300
FVSEPSFCIP GIIQGEEEQS AHSHRPSSSR TNSRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525139.11e-143PREDICTED: transcription factor TCP4
SwissprotQ9MAH87e-78TCP3_ARATH; Transcription factor TCP3
TrEMBLB9SGM01e-143B9SGM0_RICCO; Transcription factor, putative
STRINGGLYMA13G36840.21e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-79TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3