PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006072-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 279aa    MW: 30774.2 Da    PI: 8.5879
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006072-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043180202123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++Cg  Fs+   L  H+r+H
  WALNUT_00006072-RA 180 HDCSICGAEFSSGQALGGHMRRH 202
                         56********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-9105130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-8106128No hitNo description
SMARTSM003550.16106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-8175202No hitNo description
PfamPF139121.1E-11179203IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515180202IPR007087Zinc finger, C2H2
SMARTSM003550.04180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMKPSKEEVM GNCNKDHTQI ARGKRTKRHG QQSQLRLTLA STSSSDHSGA PDPRRAVPSS  60
TPSAELTDST TAEEEEEEDM ANCLILLAQG RHSRKVQEKA ALSAAYQCKT CNRCFASFQA  120
LGGHRASHKK PRADINTDEK KPLTLVGVQD YRFNNTSTTL SLQLGNRDHL YSSNNKSKVH  180
DCSICGAEFS SGQALGGHMR RHRTFMSTAT TVLSAGNTDQ SPPESHQARK KRNILQLDLN  240
LPAPEDHDHL HRDSSSFSLV SKEPVLFFSS TSALVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828342.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2I4F9K90.0A0A2I4F9K9_JUGRE; zinc finger protein ZAT5-like
STRINGXP_006493540.16e-81(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-53C2H2 family protein