PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005965-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 368aa    MW: 42219.2 Da    PI: 4.678
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005965-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36451362102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d+++++++sws  +nsfvv+d++ f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  WALNUT_00005965-RA  45 FLTKTYDIVDDQTTDHIVSWSGGNNSFVVWDPQAFSTSLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRKH 126
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  WALNUT_00005965-RA 127 LLKSIRRRKT 136
                         ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3938129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MINSQGRLQE GFPGASSSFS GMSSSLKIPP PRPMEGLQET GPPPFLTKTY DIVDDQTTDH  60
IVSWSGGNNS FVVWDPQAFS TSLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGRKHLLKS IRRRKTPQPQ ASQQALDTCI EVGRFGLEGE VDWLRRDKQV LMAELVKLRQ  180
QEQDNRTYLQ AMEDRLTKTE LKQKQTMSFL ARAMQNPNFI KQLVQQKDTR KELEEATTKK  240
RRRRLDQGPL NLEVDELGQG GESFVKVEPQ DHGDMSEFEV SVLDRLVMNV QGPCTGRSQL  300
ENPEEELIEE GEKHERRDKD LDEGYFWETL LNDGCIEEEI GIAGVEEEDE EEVDVLAEQL  360
GYLASSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-244313618122Heat shock factor protein 1
5d5v_D1e-244313627131Heat shock factor protein 1
5d5v_B1e-244313627131Heat shock factor protein 1
5d5u_B1e-244313627131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKRRRR
2239244KRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034864.11e-165Heat stress transcription factor A-6b, putative
SwissprotQ9LUH81e-133HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061EL961e-165A0A061EL96_THECC; Heat stress transcription factor A-6b, putative
STRINGPOPTR_0008s15740.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-124heat shock transcription factor A6B