PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005827-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WOX
Protein Properties Length: 283aa    MW: 31356.2 Da    PI: 6.5241
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005827-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-203091257
                        T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++R+t+t++q+++L++l+++   r psa+++++++++l    +++ ++V++WFqN++a+e++
  WALNUT_00005827-RA 30 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 91
                        58*****************8678*************************************97 PP

2Wus_type_Homeobox114.45.8e-372993265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  WALNUT_00005827-RA 29 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 93
                        789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-112595IPR009057Homeodomain-like
PROSITE profilePS5007110.3172692IPR001356Homeobox domain
SMARTSM003899.7E-62896IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-73191IPR009057Homeodomain-like
PfamPF000464.1E-173191IPR001356Homeobox domain
CDDcd000863.25E-73193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEPQQQQNQQ RPQNEDGGSG KGGFLCRQSS TRWTPTTDQI RILKDLYYNN GVRSPSADQI  60
QRISARLRQY GKIEGKNVFY WFQNHKARER QKKRFNNDVP LQRGVGNGGW KREESHTKYS  120
TMASITPGFP ASSSSSGTIS VGQMGNYGYG SVTMEKSFMD CSISTRGSGG VGGSIGHNFG  180
WVGIDPYFSS YTLFDPRRSM EENSGGEEEE EEEEEEAASE IETLPLFPMH GDDINGFCNV  240
STTTSSSNGF YSTTLYRSGR GDSGKSGSCT SLELSLNSYS RRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474187e-84AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.
GenBankEU8730907e-84EU873090.1 Glycine max wuschel gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829574.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL113e-83WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2I4FD500.0A0A2I4FD50_JUGRE; protein WUSCHEL-like
STRINGEOX908651e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-46WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]