PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005578-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 162aa    MW: 17890.5 Da    PI: 8.8466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005578-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-192071256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+  ++g+
  WALNUT_00005578-RA 20 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFDTAEEAARAYDRAAFHFRGH 71
                        69*******.**********98887..***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-281979No hitNo description
PROSITE profilePS5103225.0272078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-312080IPR001471AP2/ERF domain
SMARTSM003806.8E-352084IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-232079IPR016177DNA-binding domain
PfamPF008471.0E-132071IPR001471AP2/ERF domain
PRINTSPR003671.4E-112132IPR001471AP2/ERF domain
PRINTSPR003671.4E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEAGKKRAGN INEKSEREAR YRGIRRRPWG KFAAEIRDPT RNGARLWLGT FDTAEEAARA  60
YDRAAFHFRG HLAILNFPNE YQYYNQNQGS SFSTSSGTSF PASSSAAHAG TSSSFGQLGA  120
SASSTNGVQE GEQLIELQYF DSKLLEQLLE TAEDRPGQGR TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2920811475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827143.11e-115PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2I4F6701e-114A0A2I4F670_JUGRE; ethylene-responsive transcription factor ERF098-like
STRINGXP_008235691.18e-48(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]