PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005577-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 140aa    MW: 16123.8 Da    PI: 5.8364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005577-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-192172256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd +    + +r +lg f taeeAa+a+++a+ +++g+
  WALNUT_00005577-RA 21 RYRGVRRRP-WGKFAAEIRDSTR---QgARLWLGAFNTAEEAARAYDQAAYSMRGN 72
                        6********.**********322...24*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-332185IPR001471AP2/ERF domain
PfamPF008472.4E-142171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302181IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-222181IPR016177DNA-binding domain
PROSITE profilePS5103223.422179IPR001471AP2/ERF domain
CDDcd000184.02E-272180No hitNo description
PRINTSPR003679.5E-112233IPR001471AP2/ERF domain
PRINTSPR003679.5E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEETPKCSSV KDQDGDQKDV RYRGVRRRPW GKFAAEIRDS TRQGARLWLG AFNTAEEAAR  60
AYDQAAYSMR GNMAILNFPH EYPPSPNLYS PNSASSSTFQ NVERTSSRSH ELGKEVFEFE  120
YFDDKLLEEL LDFENKAKNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-251879263ATERF1
3gcc_A3e-251879263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292207.15e-48PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D1V24e-47A0A059D1V2_EUCGR; Uncharacterized protein
STRINGAT3G23230.19e-43(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-24ERF family protein