PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005561-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 204aa    MW: 22890 Da    PI: 8.6042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005561-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-054062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  WALNUT_00005561-RA 40 YSCSFCNRKFRSAQALGGHMNVH 62
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-63767No hitNo description
SMARTSM003550.00214062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5314067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MERTYLSSGT VKEKSCESNK FGFEEDHSCG TSWSAKHECY SCSFCNRKFR SAQALGGHMN  60
VHRIERARLR LLASSVSESH NPNPKFKPYP TLDSSPSSSS EKFPPHRHHP LPSLSSPLSA  120
PTDEEKKLVI IPELDPPLSL RGKDIRNKKR IRGVLGFGEL TGFAQIDEPK DVLREKGTVS  180
LDLEIGLVKD RKQDVDLELR LGCF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827155.11e-148PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2I4F6831e-147A0A2I4F683_JUGRE; transcriptional regulator SUPERMAN-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-22C2H2 family protein