PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005535-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 344aa    MW: 38497.7 Da    PI: 10.0301
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005535-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31278335359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  WALNUT_00005535-RA 278 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 335
                         99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.7E-18229274IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-33266336IPR003657WRKY domain
PROSITE profilePS5081129.953271337IPR003657WRKY domain
SuperFamilySSF1182903.53E-27274336IPR003657WRKY domain
SMARTSM007742.0E-38276336IPR003657WRKY domain
PfamPF031062.8E-27278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEEVEGANKA AVESCHRVLS LLSQPQDQVQ CRNLMVETGE AVFRFKKVVS LLNTGLGHAR  60
VRKLKKLQIS FPQNILLENP TCRTDQQSKN LQYLQSSFPG NPIQEIGSNV KSNLCLGNPS  120
LELSSNGKSP LQLSQKTPST HYHFLQQQHQ QRLLLQQQQA KQEAEMMYRR SNSGINLNFD  180
SSSCTPTMSS TRSFVSSLSI DGSVANLDAS AFHLIGAPHS SDQNSQQHKR KCFARGEDGS  240
VKCGSSGRCH CSKKRKHRVK RLIKVPAISN KLADIPPDDY SWRKYGQKPI KGSPHPRGYY  300
KCSSMRGCPA RKHVERCLEE PSMLIVTYEG EHNHPRLPSQ STTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202723381075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827315.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-130WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2I4F6N80.0A0A2I4F6N8_JUGRE; WRKY21
STRINGXP_008235315.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-132WRKY DNA-binding protein 21