PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005214-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 249aa    MW: 27601.6 Da    PI: 5.372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005214-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1873122255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  WALNUT_00005214-RA  73 TYRGVRKRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 122
                         69****888.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-2273131IPR016177DNA-binding domain
SMARTSM003805.8E-3773136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3173131IPR001471AP2/ERF domain
PfamPF008471.2E-1273122IPR001471AP2/ERF domain
PROSITE profilePS5103223.60473130IPR001471AP2/ERF domain
CDDcd000183.12E-3274132No hitNo description
PRINTSPR003676.2E-117485IPR001471AP2/ERF domain
PRINTSPR003676.2E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEEPRALDFN AQTSSTSYSS NTSSITPSYS SPTNIATELT ARKSCKRIQG AKDVHGSDHQ  60
EKIESGDDGK HPTYRGVRKR QWGKWVSEIR EPRKKSRIWL GTFPTAEMAA RAHDVAALTI  120
KGNLAYLNFP ELAPELPRPA SSSPKDIQAA AVKAAAMNFP KSHEAEAEAE LSHSYSPSST  180
MAFQDTQDSS TSPLNVNEDP FFDLPDLMLD VTNRIDGFSC YSSTPWQLVG TESVDTCLRI  240
EEPFLWGYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1669130363ATERF1
3gcc_A1e-1669130363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039780.12e-77Integrase-type DNA-binding superfamily protein, putative
SwissprotQ8LBQ76e-57ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A061G3Z02e-77A0A061G3Z0_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGPOPTR_0014s05500.14e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-47ERF family protein