PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004938-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 450aa    MW: 49628.9 Da    PI: 9.1191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004938-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05102124123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F++ ++L  H+r H
  WALNUT_00004938-RA 102 HICGVCGKDFPSVMSLSGHMRAH 124
                         68*******************99 PP

2zf-C2H212.70.0004330352123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C++CgksF +   L  H + H
  WALNUT_00004938-RA 330 YICSNCGKSFVTFQALGGHRSIH 352
                         89**********99999888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-559125No hitNo description
PfamPF139123.0E-56179IPR007087Zinc finger, C2H2
PfamPF139124.4E-5101126IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972102124IPR007087Zinc finger, C2H2
SMARTSM003550.011102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-7328357No hitNo description
Gene3DG3DSA:3.30.160.608.3E-5330356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757330357IPR007087Zinc finger, C2H2
PfamPF139121.1E-7330352IPR007087Zinc finger, C2H2
SMARTSM003550.12330352IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280332352IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MCLDRQESPS QMCREGTKNA NRFTSSETLN SGSTAINGRP KAKEDSVQNY VDQGASGKRS  60
CPACGRIFNS GKALGGHKAR GKCFVNARKG FDLNSGGDHQ RHICGVCGKD FPSVMSLSGH  120
MRAHPERDWR GIQPPPLSQK VDDDHSSFAL ECIEDSDIDL LKFRPDPRSN TDHRRETMES  180
SSCVLAAEGL VCLSLGSQLA NKKAILESKK SGLSVSSLKR RIDSSLFKRR GLKRSLVKAC  240
KGGSILKARN KLTDDETGRE DHEQEFMEEQ SSQRKKSTDG FVPVKTQMMK KKKKKKGKNW  300
KMMMGCSPDP EETLIMSKST AAQMAADNGY ICSNCGKSFV TFQALGGHRS IHTKDKKLRQ  360
SSDSSFADAS VVENAKESNK TSSHHVSQPP DHDDGGHIRS CVWREVESPG EASQSAPKIE  420
LPLKASQSST SIRRILDFDL NEPYDHIMED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218233KRRIDSSLFKRRGLKR
2273295RKKSTDGFVPVKTQMMKKKKKKK
3289295KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833025.10.0PREDICTED: uncharacterized protein LOC109000564
TrEMBLA0A2I4FN150.0A0A2I4FN15_JUGRE; uncharacterized protein LOC109000564
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-11C2H2 family protein