PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004937-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 476aa    MW: 53511.9 Da    PI: 7.9635
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004937-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05117138223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C +C+k F++  +L  H+r+H
  WALNUT_00004937-RA 117 RCRICNKDFPSMQSLFGHMRSH 138
                         6********************9 PP

2zf-C2H216.72.1e-05355377123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+dCgksF++   L  H ++H
  WALNUT_00004937-RA 355 YECSDCGKSFPTFQALGGHRSSH 377
                         99***********9999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6796188IPR007087Zinc finger, C2H2
SMARTSM003552.56183IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-86183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM003550.0067116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349116138IPR007087Zinc finger, C2H2
SuperFamilySSF576674.31E-8117138No hitNo description
PfamPF139129.5E-8117140IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576674.31E-8350377No hitNo description
SMARTSM003550.024355377IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-10355378IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.258355382IPR007087Zinc finger, C2H2
PROSITE patternPS000280357377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDIDGQENQF EGENHVPIEE MEKLKELTFW GTILDNDDDQ DGKPKAIKES RQDTDHHLDL  60
RICDLCGKTF SGGKALGGHR RSHFQTKKAV GFSKNIKKRD VAGADLRMDY EMINGNRCRI  120
CNKDFPSMQS LFGHMRSHPE RSWRGIQPPI LPSRRNSISS SSTSDSVDDD HNITSTDKRM  180
APNVDLLKSL SNWSQTERRG RGNIGSAWAA EIIMSFSREK DSPIPKHSVS CMDQRVDPSA  240
VVVLEERRMK KLKTVSCTDQ RVDPSAVVEE QRMTNLKIHG SGTSGRKEDE EKKIAEGGMP  300
DKPSKDRYQI GQKKMNKKKI LKCWEETLMR NSDMEEDVDH DLIDRTQKAV PYSCYECSDC  360
GKSFPTFQAL GGHRSSHNKD KMQKSNASLH EAAPARDQEK TSANINHRSW PYRTGGVAET  420
PLNKGASPAE AKSTQSAAKI ASPKEASTST DQSGVRRLTM GFDLNKPHFM EDLEDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833024.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2I4FMY10.0A0A2I4FMY1_JUGRE; zinc finger protein ZAT4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.14e-16C2H2 family protein