PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004919-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WOX
Protein Properties Length: 285aa    MW: 31531.3 Da    PI: 5.9165
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004919-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-202788257
                        T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  WALNUT_00004919-RA 27 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 88
                        58*****************8678*************************************97 PP

2Wus_type_Homeobox114.45.7e-372690265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  WALNUT_00004919-RA 26 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 90
                        689***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-111490IPR009057Homeodomain-like
PROSITE profilePS5007110.3492389IPR001356Homeobox domain
SMARTSM003895.1E-62593IPR001356Homeobox domain
CDDcd000863.18E-72890No hitNo description
Gene3DG3DSA:1.10.10.601.9E-72888IPR009057Homeodomain-like
PfamPF000462.1E-172888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEPQQQNQPP NEDGGSGKGG FLCRPSSTRW TPTTDQIRIL KDLYYNNGVR SPSAEQIQRI  60
SARLRQYGKI EGKNVFYWFQ NHKARERQKK RFNTDVPMQR GAGNGGWKPE ESIHNKYPMA  120
NITSGFPASS SSSGVISVGQ MGNYGYGSVT MEKSFRDCSI SAGGGGGVGG SISHNFGWVG  180
VNDPYSSSYT FLDKRMSMEE NSGEGDHHDQ EEEEEEEEAA PEIETLPLFP MHGDDINGFC  240
NISTPSSNGF YTTWYRSGGD DGKSSSRTSL ELSLNSYSRR SSPQH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474182e-78AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833034.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL113e-93WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2I4FMY90.0A0A2I4FMY9_JUGRE; protein WUSCHEL-like
STRINGEOX908651e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-45WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]